Microbiome Analyses

Sample Data Characteristics

By Hpv_bv

By Hpv

By BV

By Race

By Ethnicity

By Medication

Relative Abundance Plots at the grouped and independent level of samples

By HPV/BV

Grouped samples

Individual Samples

By HPV

Grouped samples

Individual Samples

By BV

Grouped samples

Individual Samples

By Race

Grouped samples

Individual Samples

By Meds

Grouped samples

Individual Samples

Relative Abundance Comparison Plots at genus level

HPV+/-

BV+/-

HPV+/-/BV+/-

Race

Status

Meds

Alpha diversity plots

HPV/BV

                              output
Method  Kruskal-Wallis rank sum test
P-value            0.174981706890341

HPV

        Wilcoxon rank sum test with continuity correction
P-value                                         0.7691009
        Welch Two Sample t-test
P-value                0.663533

BV

        Wilcoxon rank sum test with continuity correction
P-value                                         0.7741335
        Welch Two Sample t-test
P-value               0.6117378

Race

                             Overall
Method  Kruskal-Wallis rank sum test
P-value           0.0488095206020737
                                               White and 
Method  Wilcoxon rank sum test with continuity correction
P-value                                 0.557906854114182
                                               Black and 
Method  Wilcoxon rank sum test with continuity correction
P-value                                0.0722528818270734
                                          Black and White
Method  Wilcoxon rank sum test with continuity correction
P-value                                0.0589262047313455
                     White and               Black and          Black and White
Method  Welch Two Sample t-test Welch Two Sample t-test Welch Two Sample t-test
P-value       0.494780083588971      0.0622222967272361      0.0584047198543892

Meds

        Wilcoxon rank sum test with continuity correction
P-value                                         0.3984628
        Welch Two Sample t-test
P-value               0.4034268

Beta Diversity

HPV/BV

HPV

BV

Differential Abundance

Differentially Significant Microbes with Race

Differentially Significant Microbes with positive/negative status

Differentially Significant Microbes with HPV status

Differentially Significant Microbes with BV status

Differentially Significant Microbes with hpv/bv status

Differentially Significant Microbes with Meds prescribed