Microbiome Analyses

Sample Data Characteristics

Relative Abundance Plots at the grouped and independent level of samples

Relative Abundance Comparison Plots at genus level

HPV+/-

BV+/-

HPV+/-/BV+/-

Race

Status

Meds

Alpha diversity plots

HPV/BV

                              output
Method  Kruskal-Wallis rank sum test
P-value            0.174981706890341

HPV

        Wilcoxon rank sum test with continuity correction
P-value                                         0.7691009
        Welch Two Sample t-test
P-value                0.663533

BV

        Wilcoxon rank sum test with continuity correction
P-value                                         0.7741335
        Welch Two Sample t-test
P-value               0.6117378

Race

                             Overall
Method  Kruskal-Wallis rank sum test
P-value           0.0488095206020737
                                               White and 
Method  Wilcoxon rank sum test with continuity correction
P-value                                 0.557906854114182
                                               Black and 
Method  Wilcoxon rank sum test with continuity correction
P-value                                0.0722528818270734
                                          Black and White
Method  Wilcoxon rank sum test with continuity correction
P-value                                0.0589262047313455
                     White and               Black and          Black and White
Method  Welch Two Sample t-test Welch Two Sample t-test Welch Two Sample t-test
P-value       0.494780083588971      0.0622222967272361      0.0584047198543892

Meds

        Wilcoxon rank sum test with continuity correction
P-value                                         0.3984628
        Welch Two Sample t-test
P-value               0.4034268

Beta Diversity

HPV/BV

HPV

BV

Differential Abundance

Differentially Significant Microbes with Race

Differentially Significant Microbes with positive/negative status

Differentially Significant Microbes with HPV status

Differentially Significant Microbes with BV status

Differentially Significant Microbes with hpv/bv status

Differentially Significant Microbes with Meds prescribed